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New tetrahydroisoquinolines bearing nitrophenyl group targeting HSP90 and RET enzymes: synthesis, characterization and biological evaluation

Research Abstract

In this study, new tetrahydroisoquinoline compounds were synthesized by reaction of 7-Acetyl-4-cyano-1,6-dimethyl-6-hydroxy-8- (3-nitrophenyl or 4-nitrophenyl)-5,6,7,8-tetrahydrosoquinoline-3(2H)-thiones with methyl iodide, chloro acetonitrile, ethyl chloroacetate to produce compounds 3–5 and reacted with N-arylchloroacetamides reagents to gave tetrahydroisoquinolin-3-ylthio) acetamides compounds 6ac, 8ab which can cyclized to 6,7,8,9-tetrahydrothieno[2,3-c]Isoquinoline-2-carboxamides compounds 7ac, 9ab. Also react with N-(benzthiazol-2-yl)-2-chloroacetamideto give compound 10. The structures of all newly synthesized compounds were characterized by elemental and spectral analyses. Also, most of the synthesized compounds were evaluated for their anticancer activities aganist MCF7 and HEPG2 cell lines. From the result we found that the most active compound against the MCF7 cell lines was compound 8b, and the most active compound against HEPG2 cell lines was compound 3. Then the effects of compound 3 on the HEPG2 cell line was investigated using an apoptotic Annexin V-FITC test and flow cytometry. Compound 3 induced a 59-fold increase in HEPG2 cell line apoptosis and cell cycle arrested at the G0-G1, G2/M phases. Moreover, the molecular docking study was applied and the result showed that compounds 8b bind to the RET enzyme with binding energies of − 6.8 kcal/mol in comparison with standard alectinib, which exhibits a binding energy of − 7.2 kcal/mol. Compound 3 can bind with HSP 90 with a binding energy (ΔG) of − 6.8 kcal/mol, which was comparable to the standard Onalespib (− 7.1 kcal/mol).

Research Authors
Etify A Bakhite, Reda Hassanien, Nasser Farhan, Eman M Sayed, Marwa Sharaky
Research Date
Research Department
Research Journal
BMC chemistry
Research Member
Research Pages
46
Research Publisher
Springer International Publishing
Research Rank
Q2
Research Vol
19
Research Website
https://link.springer.com/article/10.1186/s13065-025-01399-0
Research Year
2025

New 5, 6, 7, 8‐Tetrahydro‐Isoquinolines Bearing 2‐Nitrophenyl Group Targeting RET Enzyme: Synthesis, Anticancer Activity, Apoptotic Induction and Cell Cycle Arrest

Research Abstract

In this work, we synthesized new 5, 6, 7, 8-tetrahydroisoquinolines and 6, 7, 8, 9-tetrahydrothieno[2, 3-c]isoquinolines derivatives, and the structures of these new compounds were confirmed with different spectroscopic techniques. Furthermore, the anticancer activities of these compounds were assessed against eight tumor cell lines and one normal human skin fibroblast cell line (HSF). Subsequently, IC50 values of the synthesized compounds were determined for two specific cancer cell lines. Compound 3 exhibited the most potent antiproliferative activity against the HEPG2 cell line, whereas compound 9c demonstrated superior efficacy against the HCT116 cell line. Moreover, the mechanism of action for compound 3 on HEPG2 cells using flow cytometry and Annexin V-FITC apoptosis analysis was studied. Compound 3 caused cell cycle arrest at the G2/M with a 50-fold increase in apoptosis of the HEPG2 cell line. Finally, a molecular docking study was conducted to assess the inhibitory potential of compounds 3 and 7 against the RET enzyme. Results indicated that compounds 3 and 7 bind to the RET enzyme with binding energies of −5.2 and −5.6 kcal/mol, respectively. Although these values suggest inhibitory activity, they are less potent than the standard inhibitor, alectinib, which exhibits a binding energy of −7.2 kcal/mol.

Research Authors
Abdelreheem A Saddik, Etify A Bakhite, Reda Hassanien, Naseer Farhan, Eman M Sayed, Marwa Sharaky
Research Date
Research Department
Research Journal
Chemistry & Biodiversity
Research Pages
e202402758
Research Publisher
Wiley
Research Rank
Q2
Research Vol
22
Research Website
https://onlinelibrary.wiley.com/doi/full/10.1002/cbdv.202402758
Research Year
2025

Exploration of Some Thieno[2,3-b]pyridines, Thieno[3,2-d]pyrimidinones, and Thieno[3,2-d][1,2,3]triazinones as Insecticidal Agents Against Aonidiella aurantii

Research Abstract

Objective: Aonidiella aurantii, a highly polyphagous insect pest belonging to the Diaspididae family, is particularly harmful to citrus plants. This pest poses a significant threat to citrus production by infesting both fruits and foliage. In contrast, heterocycle-based compounds have proven to be essential in agrochemicals and pesticides, including fungicides, insecticides/acaricides, and herbicides. In light of this, our research group focused on the synthesis of the title compounds and the evaluation of their insecticidal activity against Aonidiella aurantii. Methods: Three main series of fused heterocyclic compounds, predominantly featuring the ethyl nicotinate scaffold as a substructure, were synthesized in our laboratory. Most of the synthesized compounds were evaluated for their insecticidal activity against the nymphs and adult females of Aonidiella aurantii using the guava leaf dipping technique. Results and Discussion: The reaction of ethyl 4-aryl-5-cyano-2-methyl-6-thioxo-1,6-dihydropyridine-3-carboxylates (Ia–Ib) with N-aryl-2-chloroacetamides, carried out by refluxing in ethanol with a slight excess of anhydrous sodium carbonate, resulted in the formation of the corresponding 3-amino-4-aryl-2-[N-(aryl)carbamoyl]-5-ethoxycarbonyl-6-methylthieno[2,3-b]pyridines (IIa–IIe) in excellent yields. Upon boiling compounds (IIb–IId) with triethyl orthoformate in the presence of acetic anhydride, pyrido[3',2':4,5]thieno[3,2-d]pyrimidinones (IIIb–IIId) were obtained. Treatment of compounds (IIa–IId) with a concentrated solution of sodium nitrite in glacial acetic acid resulted in the formation of pyrido[3',2':4,5]thieno[3,2-d][1,2,3]triazinones (IVa–IVd). The structures of all compounds were confirmed through elemental and spectral analyses. Conclusions: Compounds containing the 4-chlorophenyl scaffold, such as (Ib) and (IIId), exhibited promising results against both nymphs and adult females of Aonidiella aurantii.

Research Authors
Etify A Bakhite, Mohamed A Gad, Esraa Khamies, Felwa A Thagfan, Rania Ali El Hadi Mohamed, Moustafa MS Bakry
Research Date
Research Department
Research File
Research Journal
Russian Journal of Bioorganic Chemistry
Research Pages
816-826
Research Publisher
Pleiades Publishing
Research Rank
Q4
Research Vol
51
Research Website
https://link.springer.com/article/10.1134/S1068162024605512
Research Year
2025

Potential GSK-3 binding of two novel pyrazolo [3, 4-g] isoquinoline derivatives: Synthesis, structural characterization, and computational studies

Research Abstract

Two novel pyrazolo[3,4-g]isoquinolines (III and VI) have been synthesized, and their corresponding structures were confirmed using X-ray crystallography. The short intermolecular contacts in the crystals of III and VI were identified through the analysis of the Hirshfeld surface and fingerprint plots. These analyses reveal the involvement of CS, CO, and the amine functional groups in the intermolecular hydrogen bonds and that the major contact is H···H with an overall contribution of 53-57 %. The optimized geometries and the global reactivity properties of both molecules were generated using DFT methods at the PCM-B3LYP/6-31+G(d,p) level of theory. The geometrical parameters of both molecules are relatively well reproduced with correlation coefficients between the experimental and calculated bond lengths, bond angles, and torsion angles in the ranges 90-99 %. Both compounds show similar electronic and molecular properties. Treatment for neurodegenerative and psychiatric illnesses increasingly involves pharmacologically the inhibition of glycogen synthase kinase-3 (GSK-3). Here we have focused on understanding the binding ability of our molecules with GSK-3 using molecular docking. III and VI exhibit strong binding affinity toward the GSK-3 binding site, and they formed stable complexes with their amino acids of free binding energies of 7.8 and -7.1 kcal/mol, respectively. Molecular dynamics studies were performed to investigate the stability of III-GSK-3 and VI-GSK-3 complexes. MD analysis of the RMSD, RMSF, and rGyr plots demonstrate the stability of III and VI within the binding site of GSK-3. ADMET analyses reveal that both compounds may exhibit drug-like properties such as high absorption, polarity, lipophilicity, and oral bioavailability.

Research Authors
Shaaban K Mohamed, Subramani Karthikeyan, Etify A Bakhite, Islam S Marae, Abdu E Abdel-Rahman, Mohamed Gad, Suzan Abuelhassan, Joel T Mague, Insaf Filali, Basma AA Balboul, Youness El Bakri
Research Date
Research Department
Research Journal
Journal of Molecular Structure
Research Pages
141513
Research Publisher
Elsevier
Research Rank
Q2
Research Vol
1330
Research Website
https://www.sciencedirect.com/science/article/pii/S0022286025002029
Research Year
2025

A highly substituted isoquinolinethione: Synthesis, crystal structure, DFT analysis and molecular docking studies against a series of the SARS-CoV-2 proteins

Research Abstract

Abstract

In this work, we report on a highly substituted isoquinolinethione, namely 7-acetyl-8-(4-chlorophenyl)-4-cyano-1,6-dimethyl-2,3,7,8-tetrahydro-3(2H)-isoquinolinethione acetic acid solvate (3∙AcOH), which was obtained by dehydrating of 7-acetyl-8-(4-chlorophenyl)-4-cyano-1,6-dimethyl-6-hydroxy-5,6,7,8-tetrahydro-3(2H)-isoquinolinethione (2). The obtained compound 3∙AcOH was characterized by the means of the FTIR and 1H NMR spectroscopy. The crystal structure of 3∙AcOH comprises two isomers of 3, namely (7R,8S)-7-acetyl-8-(4-chlorophenyl)-4-cyano-1,6-dimethyl-2,3,7,8-tetrahydro-3(2H)-isoquinolinethione (3-R,S) and (7S,8R)-7-acetyl-8-(4-chlorophenyl)-4-cyano-1,6-dimethyl-2,3,7,8-tetrahydro-3(2H)-isoquinolinethione (3-S,R). The crystal packing of 3∙AcOH was additionally analyzed using the Hirshfeld surface analysis to quantify intermolecular interactions. The molecule 3-R,S was studied by the DFT-based computations, electron localization function (ELF), localized orbital locator (LOL), non-covalent interactions (NCI) and reduced density gradient (RDG) plots to reveal its electronic and structural properties. Potential biological and medical activities of both isomers of 3 were predicted using the SwissADME, BOILED-Egg and ProTox 3.0 tools. Both isomers of 3 were predicted to belong to the 4th class of toxicity, with the calculated LD50 value of 657 mg/kg, and can potentially inhibit a series of the studied SARS-CoV-2 proteins, of which the best activity was revealed toward Papain-like protease (PLpro) with the ligand efficiency scores characteristic for a Hit.
Research Authors
Youness El Bakri, Damir A Safin, Shaaban K Mohamed, Islam S Marae, Etify A Bakhite, Esraa Khamies, Abdelhamid AE Soliman, Suzan Abuelhassan, Hatem A Abuelizz, Rashad Al-Salahi, Joel T Mague, Chin-Hung Lai
Research Date
Research Department
Research Journal
Journal of Molecular Structure
Research Pages
141527
Research Publisher
Elsevier
Research Rank
Q2
Research Vol
1331
Research Website
https://www.sciencedirect.com/science/article/pii/S0022286025002169
Research Year
2025

Cutting edge for technical textiles (fluorescent, antibacterial and UV-protective) by incroporation of thienoisoquinoline-quinazoline derivatives

Research Abstract

Nowadays design of multi-functionalized textiles as technical textiles is highly demanded to be applied in different environments and under hard weather condition. Herein, tri-functionalized (fluorescent, antimicrobial and UV-protection) cotton textiles were designed by immobilization of heterocyclic compounds based on quinazoline derivatives (QDs). Firstly, four quinazoline derivatives (QD-1 = H, QD-2 = O–CH3, QD-3 = Cl, QD-4 = H [without COOH]) were synthesized for the first time starting from 2-(chloromethyl) quinazoline-4(3H)-one. The chemical structure of all obtained QDs were investigated by NMR (1H & 13C) and infrared spectroscopy, in addition to the measurement of melting points, yields and emission spectra. Secondly, the synthesized QDs were immobilized within cotton textile, while cotton was per-activated by interaction with cationic reagent. The modified textiles (QDs@Q-cotton) gained dark yellow color. The QDs@Q-cotton emitted greenish radiation and showed intense emission fluorescence at 485–521 nm. Good–very good (UPF = 23.6–32.8) and good (21.3–25.8) UV protection was respectively shown for QDs@Q-cotton before and after 10 washings. The protection from UV radiation for QDs@Q-cotton is attributed to the reflection of UV radiation by effect of QDs micro particles which deposited within the cotton matrix. The modified textiles exhibited antimicrobial action against S. aureus and E. coli bacteria, while the mortality was 79.9–89.1% and 69.7–76.2% before and after 10 washings, respectively. The antibacterial activity of the QDs@Q-cotton fabrics is attributed to the QDs skeleton. The highest antibacterial action for QD-3@Q-cotton is related to the chlorine derivative. The multi-functionalized textile with good durability could be successfully employed in the military/soldiers clothes.

Research Authors
Walid Sharmoukh, Islam S Marae, Etify A Bakhite, Hanan B Ahmed, Hossam E Emam
Research Date
Research Department
Research Journal
BMC chemistry
Research Pages
173
Research Publisher
Springer International Publishing
Research Rank
Q2
Research Vol
19
Research Website
https://link.springer.com/article/10.1186/s13065-025-01504-3
Research Year
2025

Design, synthesis, structural characterization, and computational evaluation of a novel isoquinoline derivative as a promising anticancer agent

Research Abstract

Heterocyclic compounds, including isoquinoline derivatives with oxygen and sulfur groups, are important in anticancer drug discovery. They show strong biological activity and structural diversity. Medicinal studies, molecular docking, and DFT analysis help understand their effectiveness, binding ability, and stability. For this purpose, we synthesized a new isoquinoline derivative (AHIC). Its structure was verified by single-crystal X-ray analysis. The compound's geometry, FMO, and MEP were analyzed using DFT, supported by experiments. Hirshfeld surface, 3D energy framework, NLO, and NBO analyses identified hydrogen bonds affecting crystal packing. The compound shows strong NLO properties, high charge transfer, and stability, suggesting potential as an anticancer drug. The medicinal potential of AHIC was evaluated through an in silico approach in which it proved to be an effective candidate for anticancer drug development as it efficiently bound with the target substrates with binding energies of −6.87 and −6.31 Kcal/mol along with ligand efficacies of −0.24 and −0.22 Kcal/mol against Tdp1 and EGFR substrates. The MD simulation studies showed the stability of the ligand-protein complexes by calculating the RMSD for the conformation changes in the protein structure over the simulation trajectory and RMSF and SASA parameters for the accessibility of water molecules in the cell-like environment.

Research Authors
Youness El Bakri, Sabir Ali Siddique, Shaaban K Mohamed, Muhammad Sarfraz, Etify A Bakhite, Suzan Abuelhassan, Islam S Marae, Shaban AA Abdel‐Raheem, Rashad Al‐Salahi, Joel T Mague
Research Date
Research Department
Research Journal
ChemistrySelect
Research Member
Research Pages
e02211
Research Publisher
Wiley
Research Rank
Q3
Research Vol
10
Research Website
https://chemistry-europe.onlinelibrary.wiley.com/doi/full/10.1002/slct.202502211
Research Year
2025

Tetrahydroisoquinoline derivative: Design, synthesis, characterization, crystal structure investigation, and computational studies approach

Research Abstract

This work involves synthesis, characterization, crystal data investigation, Hirshfeld surface analysis, and DFT calculations of a new tatrahydroisoquinoline derivative, namely, 7-Acetyl-4-cyano-1,6-dimethyl-3-ethoxycarbonylmethylthio-6-hydroxy-8-(3-pyridyl)-5,6,7,8-tetrahydroisoquinoline (ACTQ). The crystal structure is determined by single crystal XRD, which showed that O-HO, C-HO, C-HN hydrogen bonding interactions, along with C-Nπ and C-Hπ, participate in the stabilization of the supramolecular assembly. A density functional theory (DFT) study was performed to investigate the electronic and geometric properties of ACTQ in its gaseous state. Geometry optimization revealed that the S–C bonds exhibited the longest bond lengths, whereas the O–H bond was the shortest. The subsequent NBO, QTAIM and NCI analyses showed that a weak intramolecular O-HO hydrogen bond exists in ACTQ. Although NCI also derived from the Bader’s AIM theory, the NCI result showed a difference with respect to the QTAIM result in this study. The ACTQ was subjected to structural activity relationship analysis, based on which GSK-3β was taken, and molecular docking analysis was performed. In addition to this, ADMET was also carried out to understand the future drug candidacy.

Research Authors
Shaaban K Mohamed, Muhammad Ashfaq, Subramani Karthikeyan, Esraa Khamies, Etify A Bakhite, Maher MA Hamed, Islam S Marae, Aziz Bakhtiyarovich Ibragimov, Chin-Hung Lai, Youness El Bakri, Rashad Al-Salahi
Research Date
Research Department
Research Journal
Journal of Molecular Structure
Research Pages
143484
Research Publisher
Elsevier
Research Rank
Q2
Research Website
https://www.sciencedirect.com/science/article/pii/S0022286025021519
Research Year
2025

Phthalate induced testicular degeneration in mice: biochemical, histopathological and immunohistochemical evidence for the interplay of oxidative stress, caspase-3, and NF-κB signaling

Research Abstract

Phthalates, including dibutyl phthalate (DBP) and di(2-ethylhexyl) phthalate (DEHP), are widely
used plasticizers associated with male reproductive toxicity. This study evaluated the dose- and
temporal-dependent effects of DBP and DEHP (100, 200, and 400 mg/kg for 15 days) on testicular
structure and function in immature Swiss albino mice at 36, 45, 50, and 70 days of age. Biochemical
analyses revealed significant glutathione depletion accompanied by increased nitric oxide and lipid
peroxidation levels, suggesting oxidative imbalance. Histological evaluation demonstrated severe
dose-dependent testicular injury, particularly at 36–45 days, with the 400 mg/kg groups showing 100%
damaged seminiferous tubules and marked reductions in Johnsen’s scores (3.5 ± 0.17 vs. 9.9 ± 0.10 in
controls). Increased Caspase-3 and NF-κB expression suggested possible involvement of apoptotic
and inflammatory responses. Longitudinal assessment from 50 to 70 days revealed a dose-dependent
recovery pattern, with substantial restoration in lower-dose groups, whereas higher doses remained
associated with persistent tubular damage at 70 days (47.0% in DBP and 58.8% in DEHP groups).
These findings suggest that the severity of testicular injury and the extent of recovery are influenced
by phthalate exposure dose. Therefore, further studies are required to fully understand the underlying
molecular mechanisms.

Research Authors
Reda A. Ali, Heba E. Aboulqasem & Dalia Elzahraa F. Mostafa
Research Date
Research Department
Research Journal
Scientific Reports
Research Pages
23568
Research Publisher
Springer Nature
Research Vol
16
Research Website
https://doi.org/10.1038/s41598-026-63843-y
Research Year
2026

Cardiotoxicity of Cadmium and Its Effects on Heart Efficiency During Early and Late Chick Embryogenesis

Research Abstract

Cadmium (Cd) is a dangerous heavy metal that is non-degradable in the environment. Many organs can accumulate Cd
and adversely affect organ function and health. Cd is considered as a teratogenic and embryotoxic agent. This study aims
to evaluate the teratogenicity of Cd at concentrations lesser than the permissible and its effects on the heart during chick
embryogenesis. Fertilized eggs of the chick Gallus domesticus were divided into; control, saline injected and four experimental
groups injected with single doses of 5, 25, 50 or 75 μM of CdCl2.
Histological observations of the heart before hatching
and the cardiomyocytes after hatching were recorded. Morphometric measurements of heart chambers were achieved at 3,
4 and 6 days of incubation. Electrocardiograph and respiratory rate were recorded at tenth day. Different cardiac problems
had been brought on by Cd. In comparison to controls, the heart looked much larger, and in certain cases, growth retardation
was seen. Degeneration in heart walls and malformations of dorsal aorta were noticed. Morphometrically, the width and wall
thickness of heart chambers showed significant changes. Heart beats and respiratory rate significantly decreased compared to
control. The cardiotoxic effect of Cd on heart compartments structure and function was dose dependent. One of Cd toxicity
is its ability to induce cellular oxidative stress. The heart in particular is sensitive to oxidative stress. Cardiac oxidative stress
might intensify heart failure and promote disease progression. Calcium is one of the components that is needed for normal
heart work. Cd might interfere with calcium metabolism by removing it from the body.

Research Authors
Reda A. Ali · Eatemad A. Awadalla · Amal S. Hamed · Dalia Elzahraa F. Mostafa
Research Date
Research Department
Research Journal
Cardiovascular Toxicology
Research Pages
982–1003
Research Publisher
Springer Nature
Research Vol
24
Research Website
https://link.springer.com/article/10.1007/s12012-024-09894-x
Research Year
2024
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